RTN4IP1 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RTN4IP1

Uncharacterized protein. (130 aa)

Predicted Functional Partners:

PYM1

0.808

ZYX

0.808

ACADM

0.646

RTN4

0.641

TMEM126A

0.604

MRPL30

0.595

QRSL1

0.591

NUP205

0.589

LRRC14

0.577

HCCS

0.573

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACADM	NUP205	ENSAMEP00000003764	ENSAMEP00000012709	Acyl-CoA dehydrogenase medium chain.	Nucleoporin 205.	0.553
ACADM	RTN4IP1	ENSAMEP00000003764	ENSAMEP00000001636	Acyl-CoA dehydrogenase medium chain.	Uncharacterized protein.	0.646
HCCS	RTN4IP1	ENSAMEP00000010729	ENSAMEP00000001636	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.	Uncharacterized protein.	0.573
LRRC14	RTN4IP1	ENSAMEP00000005755	ENSAMEP00000001636	Leucine rich repeat containing 14.	Uncharacterized protein.	0.577
MRPL30	RTN4IP1	ENSAMEP00000014054	ENSAMEP00000001636	Ribosomal_L30 domain-containing protein.	Uncharacterized protein.	0.595
NUP205	ACADM	ENSAMEP00000012709	ENSAMEP00000003764	Nucleoporin 205.	Acyl-CoA dehydrogenase medium chain.	0.553
NUP205	RTN4IP1	ENSAMEP00000012709	ENSAMEP00000001636	Nucleoporin 205.	Uncharacterized protein.	0.589
PYM1	RTN4IP1	ENSAMEP00000003248	ENSAMEP00000001636	PYM homolog 1, exon junction complex associated factor.	Uncharacterized protein.	0.808
QRSL1	RTN4IP1	ENSAMEP00000002700	ENSAMEP00000001636	Glutaminyl-tRNA amidotransferase subunit QRSL1.	Uncharacterized protein.	0.591
RTN4	RTN4IP1	ENSAMEP00000004299	ENSAMEP00000001636	Reticulon.	Uncharacterized protein.	0.641
RTN4IP1	ACADM	ENSAMEP00000001636	ENSAMEP00000003764	Uncharacterized protein.	Acyl-CoA dehydrogenase medium chain.	0.646
RTN4IP1	HCCS	ENSAMEP00000001636	ENSAMEP00000010729	Uncharacterized protein.	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.	0.573
RTN4IP1	LRRC14	ENSAMEP00000001636	ENSAMEP00000005755	Uncharacterized protein.	Leucine rich repeat containing 14.	0.577
RTN4IP1	MRPL30	ENSAMEP00000001636	ENSAMEP00000014054	Uncharacterized protein.	Ribosomal_L30 domain-containing protein.	0.595
RTN4IP1	NUP205	ENSAMEP00000001636	ENSAMEP00000012709	Uncharacterized protein.	Nucleoporin 205.	0.589
RTN4IP1	PYM1	ENSAMEP00000001636	ENSAMEP00000003248	Uncharacterized protein.	PYM homolog 1, exon junction complex associated factor.	0.808
RTN4IP1	QRSL1	ENSAMEP00000001636	ENSAMEP00000002700	Uncharacterized protein.	Glutaminyl-tRNA amidotransferase subunit QRSL1.	0.591
RTN4IP1	RTN4	ENSAMEP00000001636	ENSAMEP00000004299	Uncharacterized protein.	Reticulon.	0.641
RTN4IP1	TMEM126A	ENSAMEP00000001636	ENSAMEP00000009157	Uncharacterized protein.	Transmembrane protein 126A.	0.604
RTN4IP1	ZYX	ENSAMEP00000001636	ENSAMEP00000007083	Uncharacterized protein.	Zyxin.	0.808