Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMGXB4HMG-box containing 4. (601 aa)    
Predicted Functional Partners:
C17H17orf49
RNASEK-C17orf49 readthrough.
    
 
 0.815
BPTF
Bromodomain PHD finger transcription factor.
    
   0.809
NCOR1
Nuclear receptor corepressor 1.
    
   0.808
ZMIZ2
Zinc finger MIZ-type containing 2.
   
  
 0.720
BRD3
Bromodomain containing 3.
   
   0.696
FOXRED2
FAD dependent oxidoreductase domain containing 2.
      
 0.693
TRIP12
Thyroid hormone receptor interactor 12.
    
 
 0.620
LRRC45
Leucine rich repeat containing 45.
      
 0.599
NCOR2
Nuclear receptor corepressor 2.
    
   0.585
RASD2
RASD family member 2.
      
 0.583
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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