SEC14L5 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEC14L5

SEC14 like lipid binding 5. (728 aa)

Predicted Functional Partners:

PACSIN1

0.529

HAPLN2

0.522

GCFC2

0.483

RPL3L

0.454

PPARD

0.446

NANS

0.441

UGT8

0.441

PRRC2B

0.438

DCTN4

0.436

HUNK

0.424

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCTN4	SEC14L5	ENSAMEP00000004775	ENSAMEP00000001669	Dynactin subunit 4.	SEC14 like lipid binding 5.	0.436
GCFC2	PRRC2B	ENSAMEP00000018410	ENSAMEP00000017296	GC-rich sequence DNA-binding factor 2.	Proline rich coiled-coil 2B.	0.436
GCFC2	SEC14L5	ENSAMEP00000018410	ENSAMEP00000001669	GC-rich sequence DNA-binding factor 2.	SEC14 like lipid binding 5.	0.483
HAPLN2	SEC14L5	ENSAMEP00000015626	ENSAMEP00000001669	Hyaluronan and proteoglycan link protein 2.	SEC14 like lipid binding 5.	0.522
HUNK	SEC14L5	ENSAMEP00000019246	ENSAMEP00000001669	Hormonally up-regulated Neu-associated kinase.	SEC14 like lipid binding 5.	0.424
NANS	RPL3L	ENSAMEP00000004944	ENSAMEP00000008958	N-acetylneuraminate synthase.	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family.	0.529
NANS	SEC14L5	ENSAMEP00000004944	ENSAMEP00000001669	N-acetylneuraminate synthase.	SEC14 like lipid binding 5.	0.441
PACSIN1	SEC14L5	ENSAMEP00000001079	ENSAMEP00000001669	Protein kinase C and casein kinase substrate in neurons 1.	SEC14 like lipid binding 5.	0.529
PPARD	SEC14L5	ENSAMEP00000000742	ENSAMEP00000001669	Peroxisome proliferator activated receptor delta.	SEC14 like lipid binding 5.	0.446
PRRC2B	GCFC2	ENSAMEP00000017296	ENSAMEP00000018410	Proline rich coiled-coil 2B.	GC-rich sequence DNA-binding factor 2.	0.436
PRRC2B	SEC14L5	ENSAMEP00000017296	ENSAMEP00000001669	Proline rich coiled-coil 2B.	SEC14 like lipid binding 5.	0.438
RPL3L	NANS	ENSAMEP00000008958	ENSAMEP00000004944	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family.	N-acetylneuraminate synthase.	0.529
RPL3L	SEC14L5	ENSAMEP00000008958	ENSAMEP00000001669	Ribosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family.	SEC14 like lipid binding 5.	0.454
SEC14L5	DCTN4	ENSAMEP00000001669	ENSAMEP00000004775	SEC14 like lipid binding 5.	Dynactin subunit 4.	0.436
SEC14L5	GCFC2	ENSAMEP00000001669	ENSAMEP00000018410	SEC14 like lipid binding 5.	GC-rich sequence DNA-binding factor 2.	0.483
SEC14L5	HAPLN2	ENSAMEP00000001669	ENSAMEP00000015626	SEC14 like lipid binding 5.	Hyaluronan and proteoglycan link protein 2.	0.522
SEC14L5	HUNK	ENSAMEP00000001669	ENSAMEP00000019246	SEC14 like lipid binding 5.	Hormonally up-regulated Neu-associated kinase.	0.424
SEC14L5	NANS	ENSAMEP00000001669	ENSAMEP00000004944	SEC14 like lipid binding 5.	N-acetylneuraminate synthase.	0.441
SEC14L5	PACSIN1	ENSAMEP00000001669	ENSAMEP00000001079	SEC14 like lipid binding 5.	Protein kinase C and casein kinase substrate in neurons 1.	0.529
SEC14L5	PPARD	ENSAMEP00000001669	ENSAMEP00000000742	SEC14 like lipid binding 5.	Peroxisome proliferator activated receptor delta.	0.446