STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM54Tripartite motif containing 54. (312 aa)    
Predicted Functional Partners:
TRIM63
Tripartite motif containing 63.
   
  0.938
TRIM55
Tripartite motif containing 55.
   
 
 0.922
STAT3
Signal transducer and activator of transcription.
    
 0.631
TRIM23
Tripartite motif containing 23.
    
 0.580
SQSTM1
Sequestosome 1.
    
 0.539
TRIM33
Tripartite motif containing 33.
    
 
 0.504
TRIM42
Tripartite motif containing 42.
    
 
 0.501
UBQLN4
Ubiquilin 4.
    
 0.474
ZDHHC22
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
   0.467
DDX20
DEAD-box helicase 20.
    
 0.455
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.