STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFCAB1EF-hand calcium binding domain 1. (217 aa)    
Predicted Functional Partners:
C9orf116
Chromosome 9 open reading frame 116.
    
 
 0.975
ARMC4
Armadillo repeat containing 4.
  
 
 0.928
TTC25
Tetratricopeptide repeat domain 25.
   
 0.926
CCDC114
Coiled-coil domain containing 114.
    
 
 0.922
C19orf71
Chromosome 19 open reading frame 71.
    
 
 0.907
ARMC3
Armadillo repeat containing 3.
   
 
 0.905
CCDC151
Coiled-coil domain containing 151.
   
 0.903
EFCAB6
EF-hand calcium binding domain 6.
   
 0.898
EFHC2
EF-hand domain containing 2.
   
 
 0.895
C4orf47
Chromosome 4 open reading frame 47.
    
 
 0.877
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.