STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD2HERPUD family member 2. (406 aa)    
Predicted Functional Partners:
FAM8A1
Family with sequence similarity 8 member A1.
    
 
 0.758
TMUB1
Transmembrane and ubiquitin like domain containing 1.
      
 0.750
RNF185
Ring finger protein 185.
      
 0.734
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.720
RNF170
Ring finger protein 170.
      
 0.713
TMUB2
Transmembrane and ubiquitin like domain containing 2.
      
 0.638
UBE2J1
Ubiquitin conjugating enzyme E2 J1.
      
 0.609
ERLIN1
ER lipid raft associated 1.
      
 0.605
RNF5
Ring finger protein 5.
      
 0.545
C6orf120
Chromosome 6 open reading frame 120.
      
 0.483
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.