STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC88CCalponin-homology (CH) domain-containing protein. (1559 aa)    
Predicted Functional Partners:
G1L4E7_AILME
Uncharacterized protein.
 
      0.896
NUDT2
Nudix hydrolase 2.
      
 0.528
KCNF1
Potassium voltage-gated channel modifier subfamily F member 1; Belongs to the potassium channel family.
    
 
 0.517
NOL10
Nucleolar protein 10.
      
 0.514
TRIM46
Tripartite motif containing 46.
      
 0.509
STRN3
Striatin 3.
      
 0.480
PPP6R3
Protein phosphatase 6 regulatory subunit 3.
    
 
 0.463
ARVCF
ARVCF delta catenin family member.
    
 
 0.454
TCL1B
T cell leukemia/lymphoma 1B.
      
 0.452
UBE4B
Ubiquitination factor E4B.
   
  
 0.445
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.