STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PROM1Prominin 1. (756 aa)    
Predicted Functional Partners:
CDHR1
Cadherin related family member 1.
    
 
 0.534
LRIG1
Leucine rich repeats and immunoglobulin like domains 1.
    
 
 0.495
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
    
 
 0.486
PRPH2
Peripherin 2.
   
 
 0.481
FBXL3
F-box and leucine rich repeat protein 3.
      
 0.480
KRT19
Keratin 19; Belongs to the intermediate filament family.
   
  
 0.468
ROM1
Retinal outer segment membrane protein 1.
   
 
 0.468
EPCAM
Epithelial cell adhesion molecule.
   
  
 0.465
PECAM1
Platelet and endothelial cell adhesion molecule 1.
  
   
 0.461
BMI1
RING-type domain-containing protein.
      
 0.446
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.