Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL25A1Collagen type XXV alpha 1 chain. (505 aa)    
Predicted Functional Partners:
EMID1
EMI domain containing 1.
  
  
0.802
PADI3
Peptidyl arginine deiminase 3.
      
 0.767
COL23A1
Uncharacterized protein.
     
 0.646
APP
Amyloid beta precursor protein.
   
 0.640
PCSK4
Proprotein convertase subtilisin/kexin type 4; Belongs to the peptidase S8 family.
    
 0.571
G1LM57_AILME
P/Homo B domain-containing protein.
    
 0.571
FURIN
P/Homo B domain-containing protein; Belongs to the peptidase S8 family.
    
 0.571
COL26A1
Collagen type XXVI alpha 1 chain.
     
 0.568
NLGN1
COesterase domain-containing protein.
    
 
 0.542
NLGN4X
COesterase domain-containing protein.
    
 
 0.542
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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