C1orf54 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1orf54

Chromosome 1 open reading frame 54. (132 aa)

Predicted Functional Partners:

RBMS2

0.558

MAD1L1

0.503

SUCLG2

0.500

INSL6

0.491

CCDC116

0.464

PIP

0.454

TP53I13

0.439

TRAF3IP2

0.434

ERLIN2

0.426

LRPAP1

0.417

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1orf54	CCDC116	ENSAMEP00000001802	ENSAMEP00000009244	Chromosome 1 open reading frame 54.	Uncharacterized protein.	0.464
C1orf54	ERLIN2	ENSAMEP00000001802	ENSAMEP00000011516	Chromosome 1 open reading frame 54.	ER lipid raft associated 2.	0.426
C1orf54	INSL6	ENSAMEP00000001802	ENSAMEP00000010264	Chromosome 1 open reading frame 54.	Insulin like 6.	0.491
C1orf54	LRPAP1	ENSAMEP00000001802	ENSAMEP00000015679	Chromosome 1 open reading frame 54.	LDL receptor related protein associated protein 1.	0.417
C1orf54	MAD1L1	ENSAMEP00000001802	ENSAMEP00000016066	Chromosome 1 open reading frame 54.	Uncharacterized protein.	0.503
C1orf54	PIP	ENSAMEP00000001802	ENSAMEP00000020652	Chromosome 1 open reading frame 54.	Uncharacterized protein.	0.454
C1orf54	RBMS2	ENSAMEP00000001802	ENSAMEP00000004321	Chromosome 1 open reading frame 54.	RNA binding motif single stranded interacting protein 2.	0.558
C1orf54	SUCLG2	ENSAMEP00000001802	ENSAMEP00000002948	Chromosome 1 open reading frame 54.	Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial; GTP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.500
C1orf54	TP53I13	ENSAMEP00000001802	ENSAMEP00000004501	Chromosome 1 open reading frame 54.	Tumor protein p53 inducible protein 13.	0.439
C1orf54	TRAF3IP2	ENSAMEP00000001802	ENSAMEP00000017651	Chromosome 1 open reading frame 54.	TRAF3 interacting protein 2.	0.434
CCDC116	C1orf54	ENSAMEP00000009244	ENSAMEP00000001802	Uncharacterized protein.	Chromosome 1 open reading frame 54.	0.464
ERLIN2	C1orf54	ENSAMEP00000011516	ENSAMEP00000001802	ER lipid raft associated 2.	Chromosome 1 open reading frame 54.	0.426
INSL6	C1orf54	ENSAMEP00000010264	ENSAMEP00000001802	Insulin like 6.	Chromosome 1 open reading frame 54.	0.491
LRPAP1	C1orf54	ENSAMEP00000015679	ENSAMEP00000001802	LDL receptor related protein associated protein 1.	Chromosome 1 open reading frame 54.	0.417
LRPAP1	RBMS2	ENSAMEP00000015679	ENSAMEP00000004321	LDL receptor related protein associated protein 1.	RNA binding motif single stranded interacting protein 2.	0.418
MAD1L1	C1orf54	ENSAMEP00000016066	ENSAMEP00000001802	Uncharacterized protein.	Chromosome 1 open reading frame 54.	0.503
MAD1L1	RBMS2	ENSAMEP00000016066	ENSAMEP00000004321	Uncharacterized protein.	RNA binding motif single stranded interacting protein 2.	0.508
PIP	C1orf54	ENSAMEP00000020652	ENSAMEP00000001802	Uncharacterized protein.	Chromosome 1 open reading frame 54.	0.454
RBMS2	C1orf54	ENSAMEP00000004321	ENSAMEP00000001802	RNA binding motif single stranded interacting protein 2.	Chromosome 1 open reading frame 54.	0.558
RBMS2	LRPAP1	ENSAMEP00000004321	ENSAMEP00000015679	RNA binding motif single stranded interacting protein 2.	LDL receptor related protein associated protein 1.	0.418