G1L4J9_AILME protein (Ailuropoda melanoleuca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G1L4J9_AILME

Uncharacterized protein. (841 aa)

Predicted Functional Partners:

CNTN1

0.572

CNTN2

0.538

NFASC

0.526

CNTN4

0.470

CNTN3

0.443

G1L1F3_AILME

0.437

LOC105242126

0.437

CNTN6

0.437

G1M5N8_AILME

0.425

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN1	G1L4J9_AILME	ENSAMEP00000010991	ENSAMEP00000001809	Contactin 1.	Uncharacterized protein.	0.572
CNTN1	G1M5N8_AILME	ENSAMEP00000010991	ENSAMEP00000014656	Contactin 1.	Uncharacterized protein.	0.614
CNTN1	NFASC	ENSAMEP00000010991	ENSAMEP00000001308	Contactin 1.	Neurofascin.	0.985
CNTN2	G1L4J9_AILME	ENSAMEP00000001392	ENSAMEP00000001809	Contactin 2.	Uncharacterized protein.	0.538
CNTN2	G1M5N8_AILME	ENSAMEP00000001392	ENSAMEP00000014656	Contactin 2.	Uncharacterized protein.	0.604
CNTN2	NFASC	ENSAMEP00000001392	ENSAMEP00000001308	Contactin 2.	Neurofascin.	0.845
CNTN3	G1L4J9_AILME	ENSAMEP00000012093	ENSAMEP00000001809	Contactin 3.	Uncharacterized protein.	0.443
CNTN3	G1M5N8_AILME	ENSAMEP00000012093	ENSAMEP00000014656	Contactin 3.	Uncharacterized protein.	0.443
CNTN3	NFASC	ENSAMEP00000012093	ENSAMEP00000001308	Contactin 3.	Neurofascin.	0.551
CNTN4	G1L4J9_AILME	ENSAMEP00000015262	ENSAMEP00000001809	Contactin 4.	Uncharacterized protein.	0.470
CNTN4	G1M5N8_AILME	ENSAMEP00000015262	ENSAMEP00000014656	Contactin 4.	Uncharacterized protein.	0.470
CNTN4	NFASC	ENSAMEP00000015262	ENSAMEP00000001308	Contactin 4.	Neurofascin.	0.579
CNTN6	G1L4J9_AILME	ENSAMEP00000015142	ENSAMEP00000001809	Contactin 6.	Uncharacterized protein.	0.437
CNTN6	G1M5N8_AILME	ENSAMEP00000015142	ENSAMEP00000014656	Contactin 6.	Uncharacterized protein.	0.437
CNTN6	NFASC	ENSAMEP00000015142	ENSAMEP00000001308	Contactin 6.	Neurofascin.	0.559
G1L1F3_AILME	G1L4J9_AILME	ENSAMEP00000000706	ENSAMEP00000001809	Uncharacterized protein.	Uncharacterized protein.	0.437
G1L1F3_AILME	G1M5N8_AILME	ENSAMEP00000000706	ENSAMEP00000014656	Uncharacterized protein.	Uncharacterized protein.	0.437
G1L1F3_AILME	LOC105242126	ENSAMEP00000000706	ENSAMEP00000003613	Uncharacterized protein.	Uncharacterized protein.	0.900
G1L1F3_AILME	NFASC	ENSAMEP00000000706	ENSAMEP00000001308	Uncharacterized protein.	Neurofascin.	0.556
G1L4J9_AILME	CNTN1	ENSAMEP00000001809	ENSAMEP00000010991	Uncharacterized protein.	Contactin 1.	0.572