TPD52L2 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TPD52L2

TPD52 like 2. (227 aa)

Predicted Functional Partners:

TPD52

0.935

GABPB1

0.933

TPD52L3

0.932

TPD52L1

0.840

GABPA

0.807

SH3GLB1

0.757

YIF1A

0.722

NUB1

0.715

GABPB2

0.660

PYROXD2

0.646

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GABPA	GABPB1	ENSAMEP00000018146	ENSAMEP00000009415	GA binding protein transcription factor subunit alpha.	GA binding protein transcription factor subunit beta 1.	0.998
GABPA	GABPB2	ENSAMEP00000018146	ENSAMEP00000001008	GA binding protein transcription factor subunit alpha.	GA binding protein transcription factor subunit beta 2.	0.956
GABPA	TPD52L2	ENSAMEP00000018146	ENSAMEP00000001904	GA binding protein transcription factor subunit alpha.	TPD52 like 2.	0.807
GABPA	TPD52L3	ENSAMEP00000018146	ENSAMEP00000021150	GA binding protein transcription factor subunit alpha.	TPD52 like 3.	0.583
GABPB1	GABPA	ENSAMEP00000009415	ENSAMEP00000018146	GA binding protein transcription factor subunit beta 1.	GA binding protein transcription factor subunit alpha.	0.998
GABPB1	TPD52L2	ENSAMEP00000009415	ENSAMEP00000001904	GA binding protein transcription factor subunit beta 1.	TPD52 like 2.	0.933
GABPB1	TPD52L3	ENSAMEP00000009415	ENSAMEP00000021150	GA binding protein transcription factor subunit beta 1.	TPD52 like 3.	0.811
GABPB2	GABPA	ENSAMEP00000001008	ENSAMEP00000018146	GA binding protein transcription factor subunit beta 2.	GA binding protein transcription factor subunit alpha.	0.956
GABPB2	TPD52L2	ENSAMEP00000001008	ENSAMEP00000001904	GA binding protein transcription factor subunit beta 2.	TPD52 like 2.	0.660
GABPB2	TPD52L3	ENSAMEP00000001008	ENSAMEP00000021150	GA binding protein transcription factor subunit beta 2.	TPD52 like 3.	0.595
NUB1	TPD52L2	ENSAMEP00000014240	ENSAMEP00000001904	Negative regulator of ubiquitin like proteins 1.	TPD52 like 2.	0.715
PYROXD2	TPD52L2	ENSAMEP00000000073	ENSAMEP00000001904	Pyridine nucleotide-disulphide oxidoreductase domain 2.	TPD52 like 2.	0.646
SH3GLB1	TPD52L2	ENSAMEP00000017140	ENSAMEP00000001904	SH3 domain containing GRB2 like, endophilin B1.	TPD52 like 2.	0.757
TPD52	TPD52L1	ENSAMEP00000015860	ENSAMEP00000010131	Uncharacterized protein.	TPD52 like 1.	0.901
TPD52	TPD52L2	ENSAMEP00000015860	ENSAMEP00000001904	Uncharacterized protein.	TPD52 like 2.	0.935
TPD52	TPD52L3	ENSAMEP00000015860	ENSAMEP00000021150	Uncharacterized protein.	TPD52 like 3.	0.932
TPD52	YIF1A	ENSAMEP00000015860	ENSAMEP00000018091	Uncharacterized protein.	Yip1 interacting factor homolog A, membrane trafficking protein.	0.619
TPD52L1	TPD52	ENSAMEP00000010131	ENSAMEP00000015860	TPD52 like 1.	Uncharacterized protein.	0.901
TPD52L1	TPD52L2	ENSAMEP00000010131	ENSAMEP00000001904	TPD52 like 1.	TPD52 like 2.	0.840
TPD52L1	TPD52L3	ENSAMEP00000010131	ENSAMEP00000021150	TPD52 like 1.	TPD52 like 3.	0.830