STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL18A1Endostatin domain-containing protein. (1000 aa)    
Predicted Functional Partners:
G1L4Y2_AILME
FZ domain-containing protein.
 
      0.781
COL23A1
Uncharacterized protein.
  
 
0.674
MMP9
Matrix metallopeptidase 9.
   
 0.598
MMP13
Matrix metallopeptidase 13.
    
 0.586
P3H2
Prolyl 3-hydroxylase 2.
   
 
 0.500
COL6A2
Collagen type VI alpha 2 chain.
  
0.471
MMP20
Matrix metallopeptidase 20.
   
 0.451
MMP2
Matrix metallopeptidase 2.
   
 0.451
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.449
CTSB
Cathepsin B; Belongs to the peptidase C1 family.
     
 0.445
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.