Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HOXD4Homeobox D4. (246 aa)    
Predicted Functional Partners:
HOXA4
Homeobox domain-containing protein.
   
    0.931
HOXA5
Homeobox A5.
   
   0.772
HOXB7
Homeobox B7.
   
 
 0.713
HOXC4
Homeobox C4.
   
 
 0.701
HOXA7
Homeobox A7.
   
 
 0.694
HOXC5
Homeobox C5.
   
 
 0.682
HOXB6
Homeobox B6.
   
 
 0.676
HOXC6
Homeobox C6.
   
 
 0.647
HOXB5
Homeobox B5.
   
 
 0.617
G1LEJ8_AILME
Uncharacterized protein.
    
   0.565
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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