STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF6Pre-mRNA processing factor 6. (950 aa)    
Predicted Functional Partners:
PRPF8
Pre-mRNA processing factor 8.
   
 0.999
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.998
DDX23
DEAD-box helicase 23.
   
 0.997
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.997
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.996
TXNL4A
Thioredoxin like 4A.
    
 0.996
PRPF3
Pre-mRNA processing factor 3.
   
 0.995
PRPF31
Pre-mRNA processing factor 31.
   
 0.995
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.995
PRPF4
Pre-mRNA processing factor 4.
   
 0.993
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.