STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF6Pre-mRNA processing factor 6. (950 aa)    
Predicted Functional Partners:
PRPF8
Pre-mRNA processing factor 8.
   
 0.999
PRPF3
Pre-mRNA processing factor 3.
   
 0.998
PRPF31
Pre-mRNA processing factor 31.
   
 0.998
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.998
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.998
TXNL4A
Thioredoxin like 4A.
    
 0.997
MFAP1
Microfibril associated protein 1.
   
 0.997
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.997
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.996
PRPF4
Pre-mRNA processing factor 4.
   
 0.994
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.