STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC42Coiled-coil domain containing 42. (316 aa)    
Predicted Functional Partners:
AGFG1
ArfGAP with FG repeats 1.
      
 0.690
RNF141
Ring finger protein 141.
      
 0.571
LRRC18
Leucine rich repeat containing 18.
      
 0.571
CCDC113
Coiled-coil domain containing 113.
  
  
 0.557
ZBTB1
Zinc finger and BTB domain containing 1.
    
 
 0.550
ODF1
Outer dense fiber of sperm tails 1.
      
 0.542
CCDC40
Coiled-coil domain containing 40.
      
 0.540
CCDC39
Coiled-coil domain containing 39.
   
  
 0.536
PCMTD1
Protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1.
      
 0.530
G1LX83_AILME
Uncharacterized protein.
      
 0.485
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.