KCNAB1 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KCNAB1

Potassium voltage-gated channel subfamily A member regulatory beta subunit 1. (315 aa)

Predicted Functional Partners:

KCNA2

0.757

KCNA1

0.757

KCNG4

0.756

KCNA7

0.689

KCNA3

0.687

KCNC1

0.667

NUP133

0.659

KCNF1

0.651

SEC13

0.647

NUP107

0.646

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KCNA1	KCNAB1	ENSAMEP00000021332	ENSAMEP00000003334	Potassium voltage-gated channel subfamily A member 1; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	0.757
KCNA2	KCNAB1	ENSAMEP00000021139	ENSAMEP00000003334	Potassium voltage-gated channel subfamily A member 2; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	0.757
KCNA3	KCNAB1	ENSAMEP00000021138	ENSAMEP00000003334	Potassium voltage-gated channel subfamily A member 3; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	0.687
KCNA7	KCNAB1	ENSAMEP00000015271	ENSAMEP00000003334	Potassium voltage-gated channel subfamily A member 7; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	0.689
KCNAB1	KCNA1	ENSAMEP00000003334	ENSAMEP00000021332	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Potassium voltage-gated channel subfamily A member 1; Belongs to the potassium channel family.	0.757
KCNAB1	KCNA2	ENSAMEP00000003334	ENSAMEP00000021139	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Potassium voltage-gated channel subfamily A member 2; Belongs to the potassium channel family.	0.757
KCNAB1	KCNA3	ENSAMEP00000003334	ENSAMEP00000021138	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Potassium voltage-gated channel subfamily A member 3; Belongs to the potassium channel family.	0.687
KCNAB1	KCNA7	ENSAMEP00000003334	ENSAMEP00000015271	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Potassium voltage-gated channel subfamily A member 7; Belongs to the potassium channel family.	0.689
KCNAB1	KCNC1	ENSAMEP00000003334	ENSAMEP00000019233	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Potassium voltage-gated channel subfamily C member 1; Belongs to the potassium channel family.	0.667
KCNAB1	KCNF1	ENSAMEP00000003334	ENSAMEP00000020323	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Potassium voltage-gated channel modifier subfamily F member 1; Belongs to the potassium channel family.	0.651
KCNAB1	KCNG4	ENSAMEP00000003334	ENSAMEP00000006582	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Potassium voltage-gated channel modifier subfamily G member 4; Belongs to the potassium channel family.	0.756
KCNAB1	NUP107	ENSAMEP00000003334	ENSAMEP00000009083	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.646
KCNAB1	NUP133	ENSAMEP00000003334	ENSAMEP00000009657	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Nucleoporin 133.	0.659
KCNAB1	SEC13	ENSAMEP00000003334	ENSAMEP00000016895	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.647
KCNC1	KCNAB1	ENSAMEP00000019233	ENSAMEP00000003334	Potassium voltage-gated channel subfamily C member 1; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	0.667
KCNF1	KCNAB1	ENSAMEP00000020323	ENSAMEP00000003334	Potassium voltage-gated channel modifier subfamily F member 1; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	0.651
KCNG4	KCNAB1	ENSAMEP00000006582	ENSAMEP00000003334	Potassium voltage-gated channel modifier subfamily G member 4; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	0.756
NUP107	KCNAB1	ENSAMEP00000009083	ENSAMEP00000003334	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	0.646
NUP107	NUP133	ENSAMEP00000009083	ENSAMEP00000009657	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 133.	0.999
NUP107	SEC13	ENSAMEP00000009083	ENSAMEP00000016895	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.998