STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX42DEAD-box helicase 42. (935 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
   
 0.999
SF3B3
Splicing factor 3b subunit 3.
   
 0.997
SF3B4
Splicing factor 3b subunit 4.
    
 0.992
SF3B2
Splicing factor 3b subunit 2.
   
 0.991
PHF5A
PHD finger protein 5A.
   
 0.987
SF3B6
Splicing factor 3b subunit 6.
   
  0.986
SF3A2
Splicing factor 3a subunit 2.
   
 0.953
DHX15
DEAH-box helicase 15.
   
 0.844
U2SURP
U2 snRNP associated SURP domain containing.
   
 0.773
ZMAT5
Zinc finger matrin-type 5.
    
 0.736
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.