STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARBP1TAR (HIV-1) RNA binding protein 1. (1369 aa)    
Predicted Functional Partners:
MTREX
Mtr4 exosome RNA helicase.
   
    0.822
UTP20
UTP20 small subunit processome component.
   
    0.792
UTP4
UTP4 small subunit processome component.
   
    0.770
TBL3
Transducin beta like 3.
   
  
 0.770
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.707
MRPL47
Mitochondrial ribosomal protein L47.
   
 
 0.704
PDCD11
Programmed cell death 11.
  
   0.697
MRPL17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.695
MRPL21
Mitochondrial ribosomal protein L21.
   
   0.667
GTPBP3
GTP binding protein 3, mitochondrial.
   
 
 0.662
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.