STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF6Membrane associated ring-CH-type finger 6. (910 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex subunit 2.
   
 
 0.857
UBE2G2
Ubiquitin conjugating enzyme E2 G2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.827
SQLE
Squalene epoxidase.
    
 
 0.805
ZGPAT
Uncharacterized protein.
   
  
 0.792
UBE2J2
Ubiquitin conjugating enzyme E2 J2.
    
 
 0.754
DNAJC10
DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.
   
 
 0.727
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.669
RNF145
Ring finger protein 145.
    
 
 0.658
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 
 0.637
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.637
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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