NSRP1 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NSRP1

Nuclear speckle splicing regulatory protein 1. (513 aa)

Predicted Functional Partners:

CDC5L

0.925

SRRM1

0.881

SRRM2

0.876

PPIL4

0.816

PPIG

0.772

PFAS

0.763

DHX40

0.749

KHDRBS3

0.749

YJU2

0.728

UPF3B

0.722

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC5L	DHX40	ENSAMEP00000012337	ENSAMEP00000012191	Cell division cycle 5 like.	DEAH-box helicase 40.	0.610
CDC5L	NSRP1	ENSAMEP00000012337	ENSAMEP00000004249	Cell division cycle 5 like.	Nuclear speckle splicing regulatory protein 1.	0.925
CDC5L	PPIG	ENSAMEP00000012337	ENSAMEP00000011137	Cell division cycle 5 like.	Peptidylprolyl isomerase G.	0.561
CDC5L	PPIL4	ENSAMEP00000012337	ENSAMEP00000019319	Cell division cycle 5 like.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	0.487
CDC5L	SRRM1	ENSAMEP00000012337	ENSAMEP00000010580	Cell division cycle 5 like.	Serine and arginine repetitive matrix 1.	0.807
CDC5L	SRRM2	ENSAMEP00000012337	ENSAMEP00000019041	Cell division cycle 5 like.	Serine/arginine repetitive matrix 2.	0.860
CDC5L	YJU2	ENSAMEP00000012337	ENSAMEP00000002239	Cell division cycle 5 like.	YJU2 splicing factor homolog.	0.971
DHX40	CDC5L	ENSAMEP00000012191	ENSAMEP00000012337	DEAH-box helicase 40.	Cell division cycle 5 like.	0.610
DHX40	NSRP1	ENSAMEP00000012191	ENSAMEP00000004249	DEAH-box helicase 40.	Nuclear speckle splicing regulatory protein 1.	0.749
DHX40	PPIL4	ENSAMEP00000012191	ENSAMEP00000019319	DEAH-box helicase 40.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	0.696
DHX40	SRRM1	ENSAMEP00000012191	ENSAMEP00000010580	DEAH-box helicase 40.	Serine and arginine repetitive matrix 1.	0.506
DHX40	SRRM2	ENSAMEP00000012191	ENSAMEP00000019041	DEAH-box helicase 40.	Serine/arginine repetitive matrix 2.	0.509
DHX40	YJU2	ENSAMEP00000012191	ENSAMEP00000002239	DEAH-box helicase 40.	YJU2 splicing factor homolog.	0.674
KHDRBS3	NSRP1	ENSAMEP00000017686	ENSAMEP00000004249	KH RNA binding domain containing, signal transduction associated 3.	Nuclear speckle splicing regulatory protein 1.	0.749
KHDRBS3	SRRM1	ENSAMEP00000017686	ENSAMEP00000010580	KH RNA binding domain containing, signal transduction associated 3.	Serine and arginine repetitive matrix 1.	0.592
KHDRBS3	SRRM2	ENSAMEP00000017686	ENSAMEP00000019041	KH RNA binding domain containing, signal transduction associated 3.	Serine/arginine repetitive matrix 2.	0.526
NSRP1	CDC5L	ENSAMEP00000004249	ENSAMEP00000012337	Nuclear speckle splicing regulatory protein 1.	Cell division cycle 5 like.	0.925
NSRP1	DHX40	ENSAMEP00000004249	ENSAMEP00000012191	Nuclear speckle splicing regulatory protein 1.	DEAH-box helicase 40.	0.749
NSRP1	KHDRBS3	ENSAMEP00000004249	ENSAMEP00000017686	Nuclear speckle splicing regulatory protein 1.	KH RNA binding domain containing, signal transduction associated 3.	0.749
NSRP1	PFAS	ENSAMEP00000004249	ENSAMEP00000002673	Nuclear speckle splicing regulatory protein 1.	Phosphoribosylformylglycinamidine synthase.	0.763