STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTN4Reticulon. (1009 aa)    
Predicted Functional Partners:
RTN3
Reticulon.
    
0.957
BACE1
Beta-secretase 1; Belongs to the peptidase A1 family.
   
 0.953
BACE2
Beta-secretase 2; Belongs to the peptidase A1 family.
   
 0.930
LINGO1
Leucine rich repeat and Ig domain containing 1.
   
 0.708
OMG
Oligodendrocyte myelin glycoprotein.
    
 0.708
ATL3
Atlastin GTPase 3.
    
 
 0.684
ATL1
Atlastin GTPase 1.
    
 
 0.658
ATL2
Atlastin GTPase 2.
    
 
 0.632
RTN1
Reticulon.
    
 
0.606
DGCR2
DiGeorge syndrome critical region gene 2.
   
  
 0.579
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.