STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BARHL1BarH like homeobox 1. (335 aa)    
Predicted Functional Partners:
LHX5
LIM homeobox 5.
   
 
 0.548
ZIC4
Zic family member 4.
   
 
 0.541
EYA1
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
    
 
 0.538
HOMEZ
Homeobox and leucine zipper encoding.
   
 
 0.530
GFI1
Uncharacterized protein.
    
 
 0.502
LHX9
LIM homeobox 9.
   
 
 0.492
ZIC2
Zic family member 2.
   
 
 0.453
USH1C
USH1 protein network component harmonin.
      
 0.443
SLIT1
Slit guidance ligand 1.
      
 0.439
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.