STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109489886Uncharacterized protein. (428 aa)    
Predicted Functional Partners:
HSD17B10
Hydroxysteroid 17-beta dehydrogenase 10; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.675
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
   
 
 0.667
NDUFAF6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
   
 
 0.545
CACNG4
Voltage-dependent calcium channel gamma-4 subunit; Regulates the activity of L-type calcium channels that contain CACNA1C as pore-forming subunit (By similarity). Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs), including GRIA1 and GRIA4. Promotes their targeting to the cell membrane and synapses and modulates their gating properties by slowing their rates of activation, deactivation and desensitization and by mediating their resensitization; Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily.
      
 0.527
PDCD11
Programmed cell death 11.
  
    0.517
TRMT10A
tRNA methyltransferase 10A.
   
 0.492
TRMT10B
tRNA methyltransferase 10B.
   
 0.492
TRMT10C
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.492
CCNE2
Cyclin E2; Belongs to the cyclin family.
   
  
 0.483
CCNE1
Cyclin E1; Belongs to the cyclin family.
   
  
 0.483
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.