STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C11orf88Chromosome 11 open reading frame 88. (177 aa)    
Predicted Functional Partners:
GTF2B
General transcription factor IIB.
   
 0.840
TAF11
TATA-box binding protein associated factor 11.
   
 0.827
TAF2
TATA-box binding protein associated factor 2.
    
 0.827
TAF12
TATA-box binding protein associated factor 12.
    
 0.827
TAF4B
TATA-box binding protein associated factor 4b.
    
 0.827
TAF1
Transcription initiation factor TFIID subunit.
    
 0.827
TAF10
TATA-box binding protein associated factor 10.
    
 0.827
TAF13
TATA-box binding protein associated factor 13.
   
 0.826
BDP1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.
    
 0.825
GTF2A2
General transcription factor IIA subunit 2.
   
 0.821
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.