Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF38BUncharacterized protein. (547 aa)    
Predicted Functional Partners:
PRPF38A
Pre-mRNA processing factor 38A.
   
 
  0.908
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 
 0.825
RBM25
RNA binding motif protein 25.
   
  
 0.784
PNN
Pinin, desmosome associated protein.
   
    0.777
SREK1
Splicing regulatory glutamic acid and lysine rich protein 1.
   
 
 0.693
RBM39
RNA binding motif protein 39.
   
  
 0.650
ZC3H18
Zinc finger CCCH-type containing 18.
   
   0.626
SLC66A2
Solute carrier family 66 member 2.
      
 0.593
DLGAP3
DLG associated protein 3.
      
 0.587
FAM89B
Family with sequence similarity 89 member B.
      
 0.568
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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