STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF38BUncharacterized protein. (547 aa)    
Predicted Functional Partners:
PRPF38A
Pre-mRNA processing factor 38A.
     
 
0.900
PNN
Pinin, desmosome associated protein.
   
    0.796
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
 
 0.757
RBM25
RNA binding motif protein 25.
   
  
 0.684
RBM39
RNA binding motif protein 39.
   
    0.656
UBB
Ubiquitin B.
    
   0.651
SREK1
Splicing regulatory glutamic acid and lysine rich protein 1.
   
 
 0.598
SLC66A2
Solute carrier family 66 member 2.
      
 0.527
MED24
Mediator complex subunit 24.
   
  
 0.522
PRPF4B
Pre-mRNA processing factor 4B.
   
  
 0.488
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.