UBAC2 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBAC2

UBA domain containing 2. (347 aa)

Predicted Functional Partners:

FAF2

0.967

NPLOC4

0.954

UFD1

0.939

UBXN8

0.769

FAF1

0.720

DERL1

0.704

UBE2J1

0.694

FAAP100

0.637

AMFR

0.605

DERL2

0.600

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMFR	DERL1	ENSAMEP00000017557	ENSAMEP00000006867	Autocrine motility factor receptor.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.993
AMFR	DERL2	ENSAMEP00000017557	ENSAMEP00000006342	Autocrine motility factor receptor.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.931
AMFR	FAAP100	ENSAMEP00000017557	ENSAMEP00000016925	Autocrine motility factor receptor.	FA core complex associated protein 100.	0.472
AMFR	FAF1	ENSAMEP00000017557	ENSAMEP00000018459	Autocrine motility factor receptor.	Fas associated factor 1.	0.474
AMFR	FAF2	ENSAMEP00000017557	ENSAMEP00000007420	Autocrine motility factor receptor.	Fas associated factor family member 2.	0.764
AMFR	NPLOC4	ENSAMEP00000017557	ENSAMEP00000018582	Autocrine motility factor receptor.	NPL4 homolog, ubiquitin recognition factor.	0.472
AMFR	UBAC2	ENSAMEP00000017557	ENSAMEP00000004643	Autocrine motility factor receptor.	UBA domain containing 2.	0.605
AMFR	UBE2J1	ENSAMEP00000017557	ENSAMEP00000000538	Autocrine motility factor receptor.	Ubiquitin conjugating enzyme E2 J1.	0.714
AMFR	UBXN8	ENSAMEP00000017557	ENSAMEP00000001687	Autocrine motility factor receptor.	UBX domain protein 8.	0.489
AMFR	UFD1	ENSAMEP00000017557	ENSAMEP00000012030	Autocrine motility factor receptor.	Ubiquitin recognition factor in ER associated degradation 1.	0.546
DERL1	AMFR	ENSAMEP00000006867	ENSAMEP00000017557	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Autocrine motility factor receptor.	0.993
DERL1	DERL2	ENSAMEP00000006867	ENSAMEP00000006342	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.983
DERL1	FAAP100	ENSAMEP00000006867	ENSAMEP00000016925	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	FA core complex associated protein 100.	0.840
DERL1	FAF1	ENSAMEP00000006867	ENSAMEP00000018459	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Fas associated factor 1.	0.510
DERL1	FAF2	ENSAMEP00000006867	ENSAMEP00000007420	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Fas associated factor family member 2.	0.595
DERL1	NPLOC4	ENSAMEP00000006867	ENSAMEP00000018582	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	NPL4 homolog, ubiquitin recognition factor.	0.855
DERL1	UBAC2	ENSAMEP00000006867	ENSAMEP00000004643	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	UBA domain containing 2.	0.704
DERL1	UBE2J1	ENSAMEP00000006867	ENSAMEP00000000538	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Ubiquitin conjugating enzyme E2 J1.	0.617
DERL1	UBXN8	ENSAMEP00000006867	ENSAMEP00000001687	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	UBX domain protein 8.	0.510
DERL1	UFD1	ENSAMEP00000006867	ENSAMEP00000012030	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Ubiquitin recognition factor in ER associated degradation 1.	0.959