STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFCAB12EF-hand calcium binding domain 12. (581 aa)    
Predicted Functional Partners:
CCDC151
Coiled-coil domain containing 151.
   
    0.813
CFAP44
Uncharacterized protein.
   
    0.813
CCDC89
Coiled-coil domain containing 89.
   
    0.813
MFSD13A
Major facilitator superfamily domain containing 13A.
      
 0.536
KHDC4
KH domain containing 4, pre-mRNA splicing factor.
      
 0.535
WDPCP
WD repeat containing planar cell polarity effector.
      
 0.514
MRPS33
Mitochondrial ribosomal protein S33.
      
 0.512
UQCC1
Ubiquinol-cytochrome c reductase complex assembly factor 1.
      
 0.510
DDX52
DExD-box helicase 52.
      
 0.481
VARS2
Valyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.476
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.