SMAP2 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAP2

Small ArfGAP2. (429 aa)

Predicted Functional Partners:

RAI14

0.627

APPL2

0.619

ARHGEF2

0.514

SH3YL1

0.466

MYBBP1A

0.447

C2orf42

0.444

DOC2B

0.437

KIF13A

0.435

KIF13A-2

0.435

KIF13B

0.435

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APPL2	C2orf42	ENSAMEP00000007419	ENSAMEP00000016985	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	Chromosome 2 open reading frame 42.	0.634
APPL2	MYBBP1A	ENSAMEP00000007419	ENSAMEP00000007683	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	MYB binding protein 1a.	0.629
APPL2	SMAP2	ENSAMEP00000007419	ENSAMEP00000004828	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	Small ArfGAP2.	0.619
ARHGEF2	SMAP2	ENSAMEP00000000035	ENSAMEP00000004828	Rho/Rac guanine nucleotide exchange factor 2.	Small ArfGAP2.	0.514
C2orf42	APPL2	ENSAMEP00000016985	ENSAMEP00000007419	Chromosome 2 open reading frame 42.	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	0.634
C2orf42	MYBBP1A	ENSAMEP00000016985	ENSAMEP00000007683	Chromosome 2 open reading frame 42.	MYB binding protein 1a.	0.746
C2orf42	SMAP2	ENSAMEP00000016985	ENSAMEP00000004828	Chromosome 2 open reading frame 42.	Small ArfGAP2.	0.444
DOC2B	SMAP2	ENSAMEP00000008648	ENSAMEP00000004828	Double C2 domain beta.	Small ArfGAP2.	0.437
KIF13A	KIF13A-2	ENSAMEP00000000833	ENSAMEP00000008777	Kinesin family member 13A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.884
KIF13A	SMAP2	ENSAMEP00000000833	ENSAMEP00000004828	Kinesin family member 13A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Small ArfGAP2.	0.435
KIF13A-2	KIF13A	ENSAMEP00000008777	ENSAMEP00000000833	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin family member 13A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.884
KIF13A-2	SMAP2	ENSAMEP00000008777	ENSAMEP00000004828	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Small ArfGAP2.	0.435
KIF13B	SMAP2	ENSAMEP00000016989	ENSAMEP00000004828	Kinesin family member 13B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Small ArfGAP2.	0.435
MYBBP1A	APPL2	ENSAMEP00000007683	ENSAMEP00000007419	MYB binding protein 1a.	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	0.629
MYBBP1A	C2orf42	ENSAMEP00000007683	ENSAMEP00000016985	MYB binding protein 1a.	Chromosome 2 open reading frame 42.	0.746
MYBBP1A	SMAP2	ENSAMEP00000007683	ENSAMEP00000004828	MYB binding protein 1a.	Small ArfGAP2.	0.447
RAI14	SMAP2	ENSAMEP00000003522	ENSAMEP00000004828	Retinoic acid induced 14.	Small ArfGAP2.	0.627
SH3YL1	SMAP2	ENSAMEP00000010025	ENSAMEP00000004828	SH3 and SYLF domain containing 1.	Small ArfGAP2.	0.466
SMAP2	APPL2	ENSAMEP00000004828	ENSAMEP00000007419	Small ArfGAP2.	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	0.619
SMAP2	ARHGEF2	ENSAMEP00000004828	ENSAMEP00000000035	Small ArfGAP2.	Rho/Rac guanine nucleotide exchange factor 2.	0.514