WDR78 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WDR78

WD repeat domain 78. (844 aa)

Predicted Functional Partners:

RSPH9

0.882

CFAP126

0.813

WDR37

0.737

DCTN2

0.693

WDR63

0.691

WDR47

0.687

RSPH6A

0.671

RSPH4A

0.671

DYNLRB1

0.608

DYNLRB2

0.608

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CFAP126	RSPH9	ENSAMEP00000016177	ENSAMEP00000012772	Cilia and flagella associated protein 126.	Radial spoke head 9 homolog.	0.813
CFAP126	WDR78	ENSAMEP00000016177	ENSAMEP00000004967	Cilia and flagella associated protein 126.	WD repeat domain 78.	0.813
DCTN2	DYNLRB1	ENSAMEP00000005347	ENSAMEP00000009643	Dynactin subunit 2.	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.	0.592
DCTN2	DYNLRB2	ENSAMEP00000005347	ENSAMEP00000017913	Dynactin subunit 2.	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.	0.592
DCTN2	WDR63	ENSAMEP00000005347	ENSAMEP00000018246	Dynactin subunit 2.	WD repeat domain 63.	0.693
DCTN2	WDR78	ENSAMEP00000005347	ENSAMEP00000004967	Dynactin subunit 2.	WD repeat domain 78.	0.693
DYNLRB1	DCTN2	ENSAMEP00000009643	ENSAMEP00000005347	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.	Dynactin subunit 2.	0.592
DYNLRB1	WDR63	ENSAMEP00000009643	ENSAMEP00000018246	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.	WD repeat domain 63.	0.616
DYNLRB1	WDR78	ENSAMEP00000009643	ENSAMEP00000004967	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.	WD repeat domain 78.	0.608
DYNLRB2	DCTN2	ENSAMEP00000017913	ENSAMEP00000005347	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.	Dynactin subunit 2.	0.592
DYNLRB2	WDR63	ENSAMEP00000017913	ENSAMEP00000018246	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.	WD repeat domain 63.	0.616
DYNLRB2	WDR78	ENSAMEP00000017913	ENSAMEP00000004967	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.	WD repeat domain 78.	0.608
RSPH4A	RSPH9	ENSAMEP00000006054	ENSAMEP00000012772	Radial spoke head component 4A.	Radial spoke head 9 homolog.	0.888
RSPH4A	WDR78	ENSAMEP00000006054	ENSAMEP00000004967	Radial spoke head component 4A.	WD repeat domain 78.	0.671
RSPH6A	RSPH9	ENSAMEP00000000797	ENSAMEP00000012772	Radial spoke head 6 homolog A.	Radial spoke head 9 homolog.	0.887
RSPH6A	WDR78	ENSAMEP00000000797	ENSAMEP00000004967	Radial spoke head 6 homolog A.	WD repeat domain 78.	0.671
RSPH9	CFAP126	ENSAMEP00000012772	ENSAMEP00000016177	Radial spoke head 9 homolog.	Cilia and flagella associated protein 126.	0.813
RSPH9	RSPH4A	ENSAMEP00000012772	ENSAMEP00000006054	Radial spoke head 9 homolog.	Radial spoke head component 4A.	0.888
RSPH9	RSPH6A	ENSAMEP00000012772	ENSAMEP00000000797	Radial spoke head 9 homolog.	Radial spoke head 6 homolog A.	0.887
RSPH9	WDR78	ENSAMEP00000012772	ENSAMEP00000004967	Radial spoke head 9 homolog.	WD repeat domain 78.	0.882