TULP3 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TULP3

Tubby-like protein; Belongs to the TUB family. (462 aa)

Predicted Functional Partners:

IFT122

0.888

IFT140

0.856

WDR19

0.855

GPR161

0.831

TTC21B

0.811

ARL13B

0.752

IFT43

0.750

IFT88

0.749

WDR35

0.748

EVC

0.693

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL13B	EVC	ENSAMEP00000002595	ENSAMEP00000011712	ADP ribosylation factor like GTPase 13B.	EvC ciliary complex subunit 1.	0.496
ARL13B	GPR161	ENSAMEP00000002595	ENSAMEP00000006677	ADP ribosylation factor like GTPase 13B.	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	0.755
ARL13B	IFT140	ENSAMEP00000002595	ENSAMEP00000008624	ADP ribosylation factor like GTPase 13B.	Intraflagellar transport 140.	0.548
ARL13B	IFT43	ENSAMEP00000002595	ENSAMEP00000019394	ADP ribosylation factor like GTPase 13B.	Intraflagellar transport 43.	0.526
ARL13B	IFT88	ENSAMEP00000002595	ENSAMEP00000003429	ADP ribosylation factor like GTPase 13B.	Intraflagellar transport 88.	0.855
ARL13B	TULP3	ENSAMEP00000002595	ENSAMEP00000005175	ADP ribosylation factor like GTPase 13B.	Tubby-like protein; Belongs to the TUB family.	0.752
ARL13B	WDR19	ENSAMEP00000002595	ENSAMEP00000003476	ADP ribosylation factor like GTPase 13B.	WD repeat domain 19.	0.531
EVC	ARL13B	ENSAMEP00000011712	ENSAMEP00000002595	EvC ciliary complex subunit 1.	ADP ribosylation factor like GTPase 13B.	0.496
EVC	GPR161	ENSAMEP00000011712	ENSAMEP00000006677	EvC ciliary complex subunit 1.	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	0.446
EVC	IFT122	ENSAMEP00000011712	ENSAMEP00000004793	EvC ciliary complex subunit 1.	Intraflagellar transport 122.	0.509
EVC	TULP3	ENSAMEP00000011712	ENSAMEP00000005175	EvC ciliary complex subunit 1.	Tubby-like protein; Belongs to the TUB family.	0.693
GPR161	ARL13B	ENSAMEP00000006677	ENSAMEP00000002595	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	ADP ribosylation factor like GTPase 13B.	0.755
GPR161	EVC	ENSAMEP00000006677	ENSAMEP00000011712	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	EvC ciliary complex subunit 1.	0.446
GPR161	IFT122	ENSAMEP00000006677	ENSAMEP00000004793	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Intraflagellar transport 122.	0.729
GPR161	IFT140	ENSAMEP00000006677	ENSAMEP00000008624	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Intraflagellar transport 140.	0.715
GPR161	IFT88	ENSAMEP00000006677	ENSAMEP00000003429	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Intraflagellar transport 88.	0.529
GPR161	TTC21B	ENSAMEP00000006677	ENSAMEP00000016531	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Tetratricopeptide repeat domain 21B.	0.603
GPR161	TULP3	ENSAMEP00000006677	ENSAMEP00000005175	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	Tubby-like protein; Belongs to the TUB family.	0.831
GPR161	WDR19	ENSAMEP00000006677	ENSAMEP00000003476	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	WD repeat domain 19.	0.519
GPR161	WDR35	ENSAMEP00000006677	ENSAMEP00000002906	G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.	WD repeat-containing protein 35; As a component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein-coupled receptors (GPCRs), it is involved in ciliogenesis and ciliary protein trafficking.	0.549