STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMNDC1Survival motor neuron domain containing 1. (238 aa)    
Predicted Functional Partners:
PHF5A
PHD finger protein 5A.
     
 0.946
DDX46
DEAD-box helicase 46.
   
 
 0.944
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
     
 0.939
PRPF6
Pre-mRNA processing factor 6.
    
 
 0.930
PUF60
Poly(U) binding splicing factor 60.
   
 0.929
SNRPB2
Small nuclear ribonucleoprotein polypeptide B2.
   
 0.926
RBM17
RNA binding motif protein 17.
   
 
 0.923
DHX15
DEAH-box helicase 15.
   
 
  0.915
G1LU40_AILME
Uncharacterized protein.
   
 
  0.913
U2SURP
U2 snRNP associated SURP domain containing.
    
  0.874
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.