STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX5Sorting nexin; Involved in several stages of intracellular trafficking. (405 aa)    
Predicted Functional Partners:
SNX2
Sorting nexin 2.
   
0.975
VPS35
VPS35 retromer complex component.
   
 0.972
SNX1
Sorting nexin 1.
   
0.971
SNX6
Sorting nexin 6.
  
 
0.961
SNX32
Sorting nexin; Involved in several stages of intracellular trafficking.
  
 
0.961
SNX4
Sorting nexin 4.
   
 0.924
SDF2L1
Stromal cell derived factor 2 like 1.
   
 
 0.923
SNX3
Sorting nexin 3.
   
 0.899
SNX27
Sorting nexin 27.
    
 
 0.830
SNX8
PX domain-containing protein.
   
 0.827
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.