STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX25Sorting nexin 25. (513 aa)    
Predicted Functional Partners:
CCDC177
Coiled-coil domain containing 177.
     
 0.709
ANKRD10
Ankyrin repeat domain 10.
    
 0.602
VAPB
VAMP associated protein B and C.
    
 
 0.563
ARHGAP33
Rho GTPase activating protein 33.
      
 0.547
RAB33A
RAB33A, member RAS oncogene family.
      
 0.540
PMS1
PMS1 homolog 1, mismatch repair system component.
   
  
 0.529
SNX14
Sorting nexin 14.
   
 
 0.527
CDKL3
Cyclin dependent kinase like 3.
      
 0.519
BEND6
BEN domain containing 6.
      
 0.500
RAB9B
RAB9B, member RAS oncogene family.
     
 0.499
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.