FGD3 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	FGD1	ENSAMEP00000015397	ENSAMEP00000002638	Cell division cycle 42.	FYVE, RhoGEF and PH domain containing 1.	0.920
CDC42	FGD3	ENSAMEP00000015397	ENSAMEP00000006990	Cell division cycle 42.	FYVE, RhoGEF and PH domain containing 3.	0.897
CDC42	FGD4	ENSAMEP00000015397	ENSAMEP00000009467	Cell division cycle 42.	FYVE, RhoGEF and PH domain containing 4.	0.708
CDC42	GNG7	ENSAMEP00000015397	ENSAMEP00000005932	Cell division cycle 42.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.409
FGD1	CDC42	ENSAMEP00000002638	ENSAMEP00000015397	FYVE, RhoGEF and PH domain containing 1.	Cell division cycle 42.	0.920
FGD1	FGD3	ENSAMEP00000002638	ENSAMEP00000006990	FYVE, RhoGEF and PH domain containing 1.	FYVE, RhoGEF and PH domain containing 3.	0.904
FGD1	FGD4	ENSAMEP00000002638	ENSAMEP00000009467	FYVE, RhoGEF and PH domain containing 1.	FYVE, RhoGEF and PH domain containing 4.	0.505
FGD1	G1LH72_AILME	ENSAMEP00000002638	ENSAMEP00000006266	FYVE, RhoGEF and PH domain containing 1.	Uncharacterized protein.	0.920
FGD1	GNG14	ENSAMEP00000002638	ENSAMEP00000012735	FYVE, RhoGEF and PH domain containing 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.807
FGD1	GNG7	ENSAMEP00000002638	ENSAMEP00000005932	FYVE, RhoGEF and PH domain containing 1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.522
FGD3	CDC42	ENSAMEP00000006990	ENSAMEP00000015397	FYVE, RhoGEF and PH domain containing 3.	Cell division cycle 42.	0.897
FGD3	FGD1	ENSAMEP00000006990	ENSAMEP00000002638	FYVE, RhoGEF and PH domain containing 3.	FYVE, RhoGEF and PH domain containing 1.	0.904
FGD3	FGD4	ENSAMEP00000006990	ENSAMEP00000009467	FYVE, RhoGEF and PH domain containing 3.	FYVE, RhoGEF and PH domain containing 4.	0.721
FGD3	G1LH72_AILME	ENSAMEP00000006990	ENSAMEP00000006266	FYVE, RhoGEF and PH domain containing 3.	Uncharacterized protein.	0.897
FGD3	G1LZV7_AILME	ENSAMEP00000006990	ENSAMEP00000012617	FYVE, RhoGEF and PH domain containing 3.	Uncharacterized protein.	0.535
FGD3	GNG14	ENSAMEP00000006990	ENSAMEP00000012735	FYVE, RhoGEF and PH domain containing 3.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.807
FGD3	GNG7	ENSAMEP00000006990	ENSAMEP00000005932	FYVE, RhoGEF and PH domain containing 3.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.522
FGD3	PNN	ENSAMEP00000006990	ENSAMEP00000004116	FYVE, RhoGEF and PH domain containing 3.	Pinin, desmosome associated protein.	0.516
FGD3	TCEA2	ENSAMEP00000006990	ENSAMEP00000002103	FYVE, RhoGEF and PH domain containing 3.	Transcription elongation factor A2.	0.490
FGD3	TLCD3B	ENSAMEP00000006990	ENSAMEP00000015998	FYVE, RhoGEF and PH domain containing 3.	TLC domain containing 3B.	0.490