STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF144BRBR-type E3 ubiquitin transferase. (303 aa)    
Predicted Functional Partners:
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.648
UBE2L6
Ubiquitin conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.606
UBB
Ubiquitin B.
    
 0.566
PRKDC
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.543
G1L496_AILME
Uncharacterized protein.
    
 0.543
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.542
TTC6
Tetratricopeptide repeat domain 6.
      
 0.527
BIRC6
Baculoviral IAP repeat containing 6.
    
 0.525
RNF216
Ring finger protein 216.
    
 0.512
PRIM2
Uncharacterized protein.
      
 0.510
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.