STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLK4CDC like kinase 4; Belongs to the protein kinase superfamily. (481 aa)    
Predicted Functional Partners:
CLK1
CDC like kinase 1; Belongs to the protein kinase superfamily.
  
 
 
0.984
G1L799_AILME
Uncharacterized protein.
   
 
 0.647
PRPF18
SFM domain-containing protein.
      
 0.606
THRAP3
Thyroid hormone receptor associated protein 3.
    
 
 0.603
PRPF39
Pre-mRNA processing factor 39.
   
    0.567
RNPS1
RNA binding protein with serine rich domain 1.
   
 
 0.527
CWC22
CWC22 spliceosome associated protein homolog.
      
 0.507
BACE2
Beta-secretase 2; Belongs to the peptidase A1 family.
      
 0.485
SRSF5
Serine and arginine rich splicing factor 5.
   
 
 0.469
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
   
    0.465
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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