RPS15A protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPS15A

Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (130 aa)

Predicted Functional Partners:

RPS18

0.997

RPS5

0.997

RPS16

0.997

RPS29

0.997

G1MDJ1_AILME

0.995

RPL24

0.992

RPL8

0.992

RPL37

0.992

RPL13A

0.990

RPL3

0.989

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G1MDJ1_AILME	RPL13A	ENSAMEP00000017419	ENSAMEP00000014791	Uncharacterized protein.	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	0.999
G1MDJ1_AILME	RPL24	ENSAMEP00000017419	ENSAMEP00000003956	Uncharacterized protein.	TRASH domain-containing protein.	0.999
G1MDJ1_AILME	RPL3	ENSAMEP00000017419	ENSAMEP00000011415	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
G1MDJ1_AILME	RPL37	ENSAMEP00000017419	ENSAMEP00000016262	Uncharacterized protein.	Uncharacterized protein.	0.999
G1MDJ1_AILME	RPL8	ENSAMEP00000017419	ENSAMEP00000005705	Uncharacterized protein.	Ribosomal protein L8.	0.999
G1MDJ1_AILME	RPS15A	ENSAMEP00000017419	ENSAMEP00000011660	Uncharacterized protein.	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.995
G1MDJ1_AILME	RPS16	ENSAMEP00000017419	ENSAMEP00000008918	Uncharacterized protein.	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
G1MDJ1_AILME	RPS18	ENSAMEP00000017419	ENSAMEP00000001712	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.999
G1MDJ1_AILME	RPS29	ENSAMEP00000017419	ENSAMEP00000010000	Uncharacterized protein.	Ribosomal protein S29.	0.999
G1MDJ1_AILME	RPS5	ENSAMEP00000017419	ENSAMEP00000007825	Uncharacterized protein.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999
RPL13A	G1MDJ1_AILME	ENSAMEP00000014791	ENSAMEP00000017419	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
RPL13A	RPL24	ENSAMEP00000014791	ENSAMEP00000003956	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	TRASH domain-containing protein.	0.999
RPL13A	RPL3	ENSAMEP00000014791	ENSAMEP00000011415	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
RPL13A	RPL37	ENSAMEP00000014791	ENSAMEP00000016262	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.999
RPL13A	RPL8	ENSAMEP00000014791	ENSAMEP00000005705	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein L8.	0.999
RPL13A	RPS15A	ENSAMEP00000014791	ENSAMEP00000011660	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.990
RPL13A	RPS16	ENSAMEP00000014791	ENSAMEP00000008918	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
RPL13A	RPS18	ENSAMEP00000014791	ENSAMEP00000001712	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.999
RPL13A	RPS29	ENSAMEP00000014791	ENSAMEP00000010000	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein S29.	0.999
RPL13A	RPS5	ENSAMEP00000014791	ENSAMEP00000007825	Ribosomal protein L13A; Belongs to the universal ribosomal protein uL13 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999