G1LZY0_AILME protein (Ailuropoda melanoleuca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G1LZY0_AILME

Brix domain-containing protein. (462 aa)

Predicted Functional Partners:

BOP1

0.882

NOC2L

0.863

RRP15

0.861

DDX56

0.859

RSL1D1

0.840

PES1

0.838

DDX27

0.827

RPF1

0.824

WDR74

0.811

RPF2

0.810

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	DDX27	ENSAMEP00000006248	ENSAMEP00000014403	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	0.957
BOP1	DDX56	ENSAMEP00000006248	ENSAMEP00000018715	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	DEAD-box helicase 56.	0.948
BOP1	G1LZY0_AILME	ENSAMEP00000006248	ENSAMEP00000012640	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix domain-containing protein.	0.882
BOP1	NOC2L	ENSAMEP00000006248	ENSAMEP00000017471	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOC2 like nucleolar associated transcriptional repressor.	0.995
BOP1	PES1	ENSAMEP00000006248	ENSAMEP00000007851	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.999
BOP1	RPF1	ENSAMEP00000006248	ENSAMEP00000008973	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome production factor 1 homolog.	0.954
BOP1	RPF2	ENSAMEP00000006248	ENSAMEP00000016642	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome production factor 2 homolog.	0.980
BOP1	RRP15	ENSAMEP00000006248	ENSAMEP00000011465	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal RNA processing 15 homolog.	0.806
BOP1	RSL1D1	ENSAMEP00000006248	ENSAMEP00000010061	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal L1 domain containing 1.	0.989
BOP1	WDR74	ENSAMEP00000006248	ENSAMEP00000006526	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD repeat domain 74.	0.995
DDX27	BOP1	ENSAMEP00000014403	ENSAMEP00000006248	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.957
DDX27	DDX56	ENSAMEP00000014403	ENSAMEP00000018715	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	DEAD-box helicase 56.	0.892
DDX27	G1LZY0_AILME	ENSAMEP00000014403	ENSAMEP00000012640	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Brix domain-containing protein.	0.827
DDX27	NOC2L	ENSAMEP00000014403	ENSAMEP00000017471	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	NOC2 like nucleolar associated transcriptional repressor.	0.939
DDX27	PES1	ENSAMEP00000014403	ENSAMEP00000007851	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.977
DDX27	RPF1	ENSAMEP00000014403	ENSAMEP00000008973	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Ribosome production factor 1 homolog.	0.502
DDX27	RPF2	ENSAMEP00000014403	ENSAMEP00000016642	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Ribosome production factor 2 homolog.	0.921
DDX27	RRP15	ENSAMEP00000014403	ENSAMEP00000011465	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Ribosomal RNA processing 15 homolog.	0.687
DDX27	RSL1D1	ENSAMEP00000014403	ENSAMEP00000010061	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	Ribosomal L1 domain containing 1.	0.744
DDX27	WDR74	ENSAMEP00000014403	ENSAMEP00000006526	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	WD repeat domain 74.	0.838