STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTUD5OTU deubiquitinase 5. (511 aa)    
Predicted Functional Partners:
TRAF3
TNF receptor associated factor 3.
    
 0.948
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.859
UBB
Ubiquitin B.
    
 0.811
VCPIP1
Valosin containing protein interacting protein 1.
    
 
 0.705
G1L3A2_AILME
Ubiquitin-like domain-containing protein.
    
  0.630
UBA52
Ribosomal protein L40.
    
  0.630
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
    0.621
G1LCV8_AILME
Ribosomal_S27 domain-containing protein.
    
 0.611
OTUB1
Ubiquitin thioesterase.
      
 0.605
OTUD6B
OTU domain containing 6B.
      
0.603
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.