ZSCAN29 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZSCAN29

Zinc finger and SCAN domain containing 29. (852 aa)

Predicted Functional Partners:

KCTD6

0.614

PDAP1

0.601

ENOPH1

0.552

RBM7

0.528

MED11

0.528

GPR83

0.527

VOPP1

0.526

SETD7

0.486

LCLAT1

0.486

POLR2D

0.486

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENOPH1	LCLAT1	ENSAMEP00000005427	ENSAMEP00000012285	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	Lysocardiolipin acyltransferase 1.	0.439
ENOPH1	MED11	ENSAMEP00000005427	ENSAMEP00000017024	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.479
ENOPH1	VOPP1	ENSAMEP00000005427	ENSAMEP00000009675	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	VOPP1 WW domain binding protein.	0.479
ENOPH1	ZSCAN29	ENSAMEP00000005427	ENSAMEP00000016274	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	Zinc finger and SCAN domain containing 29.	0.552
GPR83	ZSCAN29	ENSAMEP00000008109	ENSAMEP00000016274	G protein-coupled receptor 83; Belongs to the G-protein coupled receptor 1 family.	Zinc finger and SCAN domain containing 29.	0.527
KCTD6	PDAP1	ENSAMEP00000012693	ENSAMEP00000006609	Potassium channel tetramerization domain containing 6.	PDGFA associated protein 1.	0.603
KCTD6	RBM7	ENSAMEP00000012693	ENSAMEP00000013978	Potassium channel tetramerization domain containing 6.	RRM domain-containing protein.	0.579
KCTD6	ZSCAN29	ENSAMEP00000012693	ENSAMEP00000016274	Potassium channel tetramerization domain containing 6.	Zinc finger and SCAN domain containing 29.	0.614
LCLAT1	ENOPH1	ENSAMEP00000012285	ENSAMEP00000005427	Lysocardiolipin acyltransferase 1.	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	0.439
LCLAT1	ZSCAN29	ENSAMEP00000012285	ENSAMEP00000016274	Lysocardiolipin acyltransferase 1.	Zinc finger and SCAN domain containing 29.	0.486
MED11	ENOPH1	ENSAMEP00000017024	ENSAMEP00000005427	Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).	0.479
MED11	POLR2D	ENSAMEP00000017024	ENSAMEP00000012352	Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	RNA polymerase II subunit D.	0.729
MED11	VOPP1	ENSAMEP00000017024	ENSAMEP00000009675	Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	VOPP1 WW domain binding protein.	0.448
MED11	ZSCAN29	ENSAMEP00000017024	ENSAMEP00000016274	Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Zinc finger and SCAN domain containing 29.	0.528
PDAP1	KCTD6	ENSAMEP00000006609	ENSAMEP00000012693	PDGFA associated protein 1.	Potassium channel tetramerization domain containing 6.	0.603
PDAP1	RBM7	ENSAMEP00000006609	ENSAMEP00000013978	PDGFA associated protein 1.	RRM domain-containing protein.	0.528
PDAP1	ZSCAN29	ENSAMEP00000006609	ENSAMEP00000016274	PDGFA associated protein 1.	Zinc finger and SCAN domain containing 29.	0.601
POLR2D	MED11	ENSAMEP00000012352	ENSAMEP00000017024	RNA polymerase II subunit D.	Mediator of RNA polymerase II transcription subunit 11; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.729
POLR2D	ZSCAN29	ENSAMEP00000012352	ENSAMEP00000016274	RNA polymerase II subunit D.	Zinc finger and SCAN domain containing 29.	0.486
RBM7	KCTD6	ENSAMEP00000013978	ENSAMEP00000012693	RRM domain-containing protein.	Potassium channel tetramerization domain containing 6.	0.579