STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dole_0590PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: sth:STH2808 putative muramoyltetrapeptide carboxypeptidase. (305 aa)    
Predicted Functional Partners:
Dole_0589
Protein of unknown function DUF362; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF362; KEGG: mba:Mbar_A0270 hypothetical protein.
       0.746
Dole_0591
PFAM: beta-lactamase; KEGG: sfu:Sfum_0547 beta-lactamase.
 
   
 0.678
Dole_0595
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: sfu:Sfum_2589 peptidoglycan glycosyltransferase.
    
 0.577
Dole_1984
PFAM: conserved hypothetical protein; KEGG: dps:DP2946 hypothetical protein.
  
     0.547
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
   
 
 0.526
Dole_2225
PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: tcx:Tcr_0793 peptidase S13, D-Ala-D-Ala carboxypeptidase C.
 
   
 0.518
Dole_0588
PFAM: aminotransferase class I and II; KEGG: gme:Gmet_2078 hypothetical protein.
       0.490
Dole_0295
Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: tte:TTE0215 Beta-glucosidase-related glycosidases.
 
   
 0.455
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.