STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dole_0807PFAM: secretion protein HlyD family protein; KEGG: plt:Plut_1082 putative ABC transport system, lipoprotein. (310 aa)    
Predicted Functional Partners:
Dole_0809
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afw:Anae109_0894 ABC transporter related.
 
  
 0.963
Dole_0810
PFAM: ABC-2 type transporter; KEGG: rca:Rcas_2358 ABC-2 type transporter.
 
  
 0.958
Dole_0808
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_3463 ABC transporter-related protein.
 
  
 0.957
macB
ABC transporter-related protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.956
Dole_0806
PFAM: outer membrane efflux protein; KEGG: ade:Adeh_1477 outer membrane efflux protein.
 
 
 0.899
Dole_0811
PFAM: ABC-2 type transporter; KEGG: gme:Gmet_3460 ABC-2.
 
  
 0.898
Dole_2896
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sat:SYN_02073 type I secretion outer membrane protein.
 
 
 0.827
Dole_1629
PFAM: outer membrane efflux protein; KEGG: cte:CT0376 FusA/NodT family protein.
 
 
 0.811
Dole_1217
PFAM: outer membrane efflux protein; KEGG: pca:Pcar_0364 outer membrane channel protein.
 
 
 0.798
Dole_0805
PFAM: regulatory protein TetR; KEGG: sru:SRU_0477 transcriptional regulator, TetR family protein.
 
  
 0.756
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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