Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dole_1007KEGG: gur:Gura_1170 hypothetical protein. (244 aa)    
Predicted Functional Partners:
Dole_3184
KEGG: sfu:Sfum_2565 CO dehydrogenase/acetyl-CoA synthase complex, beta subunit; TIGRFAM: CO dehydrogenase/acetyl-CoA synthase complex, beta subunit; PFAM: CO dehydrogenase/acetyl-CoA synthase complex beta subunit.
 
   
 0.781
Dole_1151
PFAM: methylenetetrahydrofolate reductase; KEGG: sfu:Sfum_3130 methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
 
  
 0.763
Dole_0458
PFAM: methylenetetrahydrofolate reductase; KEGG: sfu:Sfum_3130 methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
 
  
 0.750
Dole_3183
PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit; Fe-S cluster domain protein; KEGG: sfu:Sfum_2564 CO dehydrogenase/acetyl-CoA synthase delta subunit.
 
   
 0.745
Dole_3185
KEGG: sfu:Sfum_2566 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.
 
   
 0.735
Dole_1461
KEGG: sfu:Sfum_2566 carbon-monoxide dehydrogenase, catalytic subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane.
 
   
 0.728
Dole_3186
PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit; KEGG: sfu:Sfum_2567 CO dehydrogenase/acetyl-CoA synthase delta subunit.
 
   
 0.726
Dole_1029
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sfu:Sfum_4099 cobyrinic acid a,c-diamide synthase.
 
   
 0.710
Dole_1488
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sfu:Sfum_2761 cobyrinic acid a,c-diamide synthase.
 
   
 0.705
Dole_2510
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mja:MJ0084 CODH nickel-insertion accessory protein (CooC).
 
   
 0.692
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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