STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dole_1062KEGG: aba:Acid345_0809 hypothetical protein. (754 aa)    
Predicted Functional Partners:
Dole_1061
KEGG: sfu:Sfum_2845 temperature sensitive supressor-like.
       0.623
Dole_2478
KEGG: sfu:Sfum_1041 hypothetical protein.
   
 0.622
Dole_1093
KEGG: cph:Cpha266_0617 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE domain protein; Cache type 2 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; GAF domain protein.
  
 
 0.610
Dole_0645
KEGG: ana:alr2258 serine/threonine kinase with two-component sensor domain; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; protein kinase; GAF domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase.
  
  
 0.513
Dole_0067
PFAM: cyclic nucleotide-binding; KEGG: mgm:Mmc1_1803 cyclic nucleotide-binding protein.
  
 0.493
Dole_1878
PFAM: cyclic nucleotide-binding; KEGG: mxa:MXAN_2521 cyclic nucleotide-binding domain protein.
  
 0.493
Dole_2102
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sfu:Sfum_3445 transcriptional regulator, Crp/Fnr family.
  
 0.493
Dole_2199
PFAM: cyclic nucleotide-binding; KEGG: dps:DP0804 hypothetical protein.
  
 0.493
Dole_2371
PFAM: cyclic nucleotide-binding; KEGG: rrs:RoseRS_0201 hypothetical protein.
  
 0.493
Dole_2760
PFAM: cyclic nucleotide-binding; KEGG: mxa:MXAN_4398 protein phosphatase/cyclic nucleotide-binding domain protein.
  
 0.493
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.