STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dole_1069PFAM: amidohydrolase 2; KEGG: cth:Cthe_1291 amidohydrolase 2. (305 aa)    
Predicted Functional Partners:
Dole_1068
KEGG: tte:TTE0161 Alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein.
       0.714
Dole_1607
PFAM: amidohydrolase 2; KEGG: rxy:Rxyl_2657 amidohydrolase 2.
  
     0.594
Dole_1070
PFAM: aminotransferase class-III; KEGG: ttj:TTHA0909 probable ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.588
Dole_1071
PFAM: aminotransferase class-III; KEGG: afu:AF1815 acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.520
Dole_1072
PFAM: NADPH-dependent FMN reductase; KEGG: mth:MTH135 hypothetical protein.
 
     0.504
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.