STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dole_1237Hypothetical protein. (383 aa)    
Predicted Functional Partners:
Dole_1235
KEGG: pca:Pcar_1655 hypothetical protein.
       0.773
Dole_1236
KEGG: pca:Pcar_1654 hypothetical protein.
       0.773
Dole_1238
Hypothetical protein.
       0.773
Dole_1239
Hypothetical protein.
       0.773
Dole_1240
Hypothetical protein.
       0.773
Dole_1234
PFAM: alpha/beta hydrolase fold; KEGG: dsy:DSY2637 hypothetical protein.
       0.482
Dole_1232
PFAM: protein of unknown function DUF1121; KEGG: sfu:Sfum_0236 protein of unknown function DUF1121.
       0.441
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.441
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.