STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dole_1420KEGG: vvy:VV2095 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; metal-dependent phosphohydrolase HD region. (543 aa)    
Predicted Functional Partners:
Dole_2315
KEGG: mgm:Mmc1_3530 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 0.821
Dole_1421
Putative PAS/PAC sensor protein; KEGG: cvi:CV_2497 probable two component system, transcriptional regulatory protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; metal-dependent phosphohydrolase HD region.
 
 
 
0.812
Dole_1741
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: mxa:MXAN_2997 HAMP domain/GAF domain/GGDEF domain protein.
  
 0.802
Dole_1227
Diguanylate cyclase with PAS/PAC sensor; KEGG: pau:PA14_53310 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; type IV pilus assembly PilZ; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 0.780
Dole_2447
Diguanylate cyclase with PAS/PAC sensor; KEGG: pau:PA14_53310 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 0.778
Dole_1752
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ppd:Ppro_0085 diguanylate cyclase with PAS/PAC sensor.
 
  
 0.776
Dole_2380
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: hch:HCH_04724 response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
 0.771
Dole_0735
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: mmw:Mmwyl1_1036 diguanylate cyclase.
  
 0.768
Dole_1093
KEGG: cph:Cpha266_0617 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE domain protein; Cache type 2 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; GAF domain protein.
 
 0.768
Dole_1377
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dvl:Dvul_2518 diguanylate cyclase.
  
 0.759
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.