STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dole_1489PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pca:Pcar_0499 hypothetical protein. (190 aa)    
Predicted Functional Partners:
Dole_1490
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.747
Dole_1487
PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: pca:Pcar_3080 ribosomal protein L11 methyltransferase.
       0.480
Dole_1488
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sfu:Sfum_2761 cobyrinic acid a,c-diamide synthase.
       0.471
Your Current Organism:
Desulfococcus oleovorans
NCBI taxonomy Id: 96561
Other names: D. oleovorans Hxd3, Desulfobacteirum oleovorans Hxd3, Desulfococcus oleovorans Hxd3, delta proteobacterium Hxd3, sulfate-reducing bacterium Hxd3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.