Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Dole_0071 | ubiE | Dole_0071 | Dole_1491 | PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: sat:SYN_00084 multimeric flavodoxin. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.900 |
| Dole_1493 | Dole_1494 | Dole_1493 | Dole_1494 | PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mac:MA0956 6-pyruvoyltetrahydropterin synthase. | PFAM: beta-lactamase domain protein; KEGG: swo:Swol_1480 Zn-dependent hydrolases including glyoxylases-like protein. | 0.781 |
| Dole_1493 | dnaJ | Dole_1493 | Dole_1492 | PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mac:MA0956 6-pyruvoyltetrahydropterin synthase. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.697 |
| Dole_1493 | pyrD | Dole_1493 | Dole_1495 | PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mac:MA0956 6-pyruvoyltetrahydropterin synthase. | Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate. | 0.788 |
| Dole_1493 | ubiE | Dole_1493 | Dole_1491 | PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mac:MA0956 6-pyruvoyltetrahydropterin synthase. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.472 |
| Dole_1494 | Dole_1493 | Dole_1494 | Dole_1493 | PFAM: beta-lactamase domain protein; KEGG: swo:Swol_1480 Zn-dependent hydrolases including glyoxylases-like protein. | PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mac:MA0956 6-pyruvoyltetrahydropterin synthase. | 0.781 |
| Dole_1494 | dnaJ | Dole_1494 | Dole_1492 | PFAM: beta-lactamase domain protein; KEGG: swo:Swol_1480 Zn-dependent hydrolases including glyoxylases-like protein. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.616 |
| Dole_1494 | pyrD | Dole_1494 | Dole_1495 | PFAM: beta-lactamase domain protein; KEGG: swo:Swol_1480 Zn-dependent hydrolases including glyoxylases-like protein. | Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate. | 0.793 |
| Dole_1494 | ubiE | Dole_1494 | Dole_1491 | PFAM: beta-lactamase domain protein; KEGG: swo:Swol_1480 Zn-dependent hydrolases including glyoxylases-like protein. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.435 |
| Dole_3212 | ubiE | Dole_3212 | Dole_1491 | TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: sfu:Sfum_0287 UbiD family decarboxylases; Belongs to the UbiD family. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.802 |
| Dole_3230 | ubiE | Dole_3230 | Dole_1491 | PFAM: Polyprenyl synthetase; KEGG: sfu:Sfum_1586 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.525 |
| bioB | ubiE | Dole_0682 | Dole_1491 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.416 |
| dnaJ | Dole_1493 | Dole_1492 | Dole_1493 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mac:MA0956 6-pyruvoyltetrahydropterin synthase. | 0.697 |
| dnaJ | Dole_1494 | Dole_1492 | Dole_1494 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | PFAM: beta-lactamase domain protein; KEGG: swo:Swol_1480 Zn-dependent hydrolases including glyoxylases-like protein. | 0.616 |
| dnaJ | pyrD | Dole_1492 | Dole_1495 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate. | 0.605 |
| dnaJ | ubiE | Dole_1492 | Dole_1491 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.594 |
| pyrD | Dole_1493 | Dole_1495 | Dole_1493 | Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate. | PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mac:MA0956 6-pyruvoyltetrahydropterin synthase. | 0.788 |
| pyrD | Dole_1494 | Dole_1495 | Dole_1494 | Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate. | PFAM: beta-lactamase domain protein; KEGG: swo:Swol_1480 Zn-dependent hydrolases including glyoxylases-like protein. | 0.793 |
| pyrD | dnaJ | Dole_1495 | Dole_1492 | Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.605 |
| pyrD | ubiE | Dole_1495 | Dole_1491 | Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.455 |
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